

Finding the Product for a 1° Alcohol
This section is a brief overview on how to find the product for a 1° Alcohol (Primary) using a example from a real scientific research paper.

Propose a Mechanism.
Where did this Reaction come from?
Where did this Reaction come from?
Condensed Synthesis Overview of the Asymmetric Total Synthesis of Taxol by Mukaiyama et al. (1999)
This 61 step linear synthesis features Swern Oxidation for a total of 4 steps out of 61 steps. L-serine is the starting material and undergoes 61 steps to form Taxol.
How is Swern Oxidation used?
How is Swern Oxidation used?
Retrosynthetic Analysis of Taxol
In 1999, Mukaiyama et al. published the Mukaiyama Asymmetric Total Synthesis of Taxol. Taxol, a well-known complex organic molecule, underwent retrosynthetic analysis, revealing an optically active ketone intermediate (3), which could be further simplified into a chiral aldehyde intermediate (4).


Identify the Right Reagents


Identify the Key Features of the Compound


- Primary
- Secondary
- Tertiary
- Primary alcohols can go through Swern Oxidation to become an Aldehyde.
Identifying Side Chains and Alcohol Conversion


Tracking Side Chains and Alcohol Conversion.
In Swern oxidation of primary alcohols, the process involves assigning one side chain (R) to understand the reaction better.
- Assign the Side Chain (R): Identify the non-alcohol part of the molecule and assign it as the placeholder ‘R’ or side chain.
- Understand Its Role: This placeholder helps track the unchanged part of the molecule, aiding in visualizing the structure before and after the reaction.
- Focus on the Reaction Center: The primary alcohol is selectively oxidized to form an aldehyde. The placeholder shows how the structure is altered.
- Reassign the Side Chain: After the reaction, reattach the placeholder R to the new aldehyde, demonstrating the unchanged nature of the side chain.


Variations on how Aldehydes may appear.
They may be differently presented in different questions as shown in the image, however they are the same structure.
Mechanism for 1° Alcohol
This section is a brief overview on how to perform the mechanism for a 1° Alcohol (Primary) using the example from above.DMSO undergoes Resonance


Resonance forms of DMSO.
DMSO is capable of undergoing resonance. This is important for the next step.
Chlorosulfonium Ion Formation


Nucleophillic attack using DMSO Resonance structure.
DMSO Resonance Structure performs Nucleophilic Attack, Chloride Ion acts as a Leaving Group.
Chlorodimethyl Sulfonium Ion and Byproduct Formation


Chlorodimethyl Sulfonium Ion Formation.
The nucleophilic attack initiates proton transfer within the Chlorosulfonium Ion to form Chlorodimethyl Sulfonium Ion its byproduct.
Alcohol and Base Addition


Addition of the Primary Alcohol and 2 equivalents of TEA (Triethylamine).
This process produces a alkoxysulfonium ion intermediate. However the octet rule is violated in the newly produced ion, so TEA (Triethylamine) is needed to stabilize the molecule for further transformation.
Ylide Formation and Intramolecular Elimination


Aldehyde product and DMS byproduct Formation.
Sulfur Ylide decomposes to form DMS and the desired aldehyde product.
Finding the Product for a 2° Alcohol
This section is a brief overview on how to find the product for a 2° Alcohol (Secondary) using a example from a real scientific research paper.

Propose a Mechanism for this Reaction 3
How is Swern Oxidation used?
How is Swern Oxidation used?
Identify the Right Reagents


Identify the Key Features of the Compound


- Primary
- Secondary
- Tertiary
- Primary alcohols can go through Swern Oxidation to become an Aldehyde.
Identifying Side Chains and Alcohol Conversion


Tracking Side Chains and Alcohol Conversion.
In Swern oxidation of primary alcohols, the process involves assigning one side chain (R) to understand the reaction better.
- Assign the Side Chain (R): Identify the non-alcohol part of the molecule and assign it as the placeholder ‘R’ or side chain.
- Understand Its Role: This placeholder helps track the unchanged part of the molecule, aiding in visualizing the structure before and after the reaction.
- Focus on the Reaction Center: The primary alcohol is selectively oxidized to form an aldehyde. The placeholder shows how the structure is altered.
- Reassign the Side Chain: After the reaction, reattach the placeholder R to the new aldehyde, demonstrating the unchanged nature of the side chain.
Mechanism for 2° Alcohol
This section is a brief overview on how to perform the mechanism for a 2° Alcohol (Secondary) using the example from above.DMSO undergoes Resonance


Resonance forms of DMSO.
DMSO is capable of undergoing resonance. This is important for the next step.
Chlorosulfonium Ion Formation


Nucleophillic attack using DMSO Resonance structure.
DMSO Resonance Structure performs Nucleophilic Attack, Chloride Ion acts as a Leaving Group.
Chlorodimethyl Sulfonium Ion and Byproduct Formation


Chlorodimethyl Sulfonium Ion Formation.
The nucleophilic attack initiates proton transfer within the Chlorosulfonium Ion to form Chlorodimethyl Sulfonium Ion its byproduct.
Alcohol and Base Addition


Addition of the Secondary Alcohol and 2 equivalents of TEA (Triethylamine).
This process produces a alkoxysulfonium ion intermediate. However the octet rule is violated in the newly produced ion, so TEA (Triethylamine) is needed to stabilize the molecule for further transformation. This process is the same as the primary alcohol, except there is an additional side chain.
Ylide Formation and Intramolecular Elimination


Ketone product and DMS byproduct Formation.
Sulfur Ylide decomposes to form DMS and the desired ketone product.
Sample Problems
Test your Knowledge.Question 1
Predict the Product.

Reveal the Answer.
Reveal the Answer.


Where did this Reaction come from?
Where did this Reaction come from?
Overall Synthesis of (+)-Pentacycloanammoxic Acid from the starting material cyclooctatetraene.
Cyclooctatetraene underwent a 15 step synthesis pathway to form the end product:(+)-Pentacycloanammoxic Acid.
Question 2
Propose a Mechanism for this Reaction.

Reveal the Answer.
Reveal the Answer.
Identify the necessary side chain and product.


Tracking Side Chains and Alcohol Conversion in Swern Oxidation.
Be careful when assigning side chain placeholders. If you do not see a side chain visible that is not denoted by H or another group. Assume its a Methyl group. In the example, it was not shown, however for group tracking we have shown it in red.
Perform the Mechanism for Primary Alcohols


Reconstruct the final product.
Where did this Reaction come from?
Where did this Reaction come from?
Condensed Synthesis Overview of the Asymmetric Total Synthesis of Taxol by Mukaiyama et al. (1999)
This 61 step linear synthesis features Swern Oxidation for a total of 4 steps out of 61 steps.
How is Dess-Martin Oxidation used?
How is Dess-Martin Oxidation used?
Retrosynthetic Analysis of Taxol.
The Mukaiyama Asymmetric Total Synthesis of Taxol was published in 1999 by Mukaiyama et al (1999). Taxol, a well known and difficult complex organic molecule, underwent retrosynthetic analysis. This revealed a optically active ketone intermediate (3) which could be further broken down into another basic unit (4)


Summary
The reaction entry summary. Find the general scheme and full summarized mechanisms here.General Scheme
This section briefly summarizes what can and cannot undergo reactions.

- 1° Alcohols (Primary) get oxidized to Aldehydes.
- 2° Alcohols (Secondary) get oxidized to Ketones.
- 3° Alcohols (Tertiary) do not get oxidized at all.
General Mechanism
This section briefly summarizes steps to find the product and perform the mechanisms. Quick steps to finding the product for any alcohol- Identify the reagents.
- Assign side chains (non alcohol part).
- Selectively convert Alcohol to correct product based on alcohol type. Nothing else.
- Keep the side chains (non alcohol part) the same and piece together the full molecule together again.
Full Primary Mechanism
Full Primary Mechanism


Full Secondary Mechanism
Full Secondary Mechanism


References
- Omura, K.; Swern, D. Oxidation of Alcohols by “Activated” Dimethyl Sulfoxide. A Preparative, Steric and Mechanistic Study. Tetrahedron 1978, 34 (11), 1651–1660. DOI: 10.1016/0040-4020(78)80197-5
- Mukaiyama, T.; Shiina, I.; Iwadare, H.; Saitoh, M.; Nishimura, T.; Ohkawa, N.; Sakoh, H.; Nishimura, K.; Tani, Y.-i.; Hasegawa, M.; Yamada, K.; Saitoh, K. Asymmetric Total Synthesis of Taxol. Chem. Eur. J. 1999, 5 (1), 121–161. DOI: 10.1002/(SICI)1521-3765(19990104)5:1<121::AID-CHEM121>3.0.CO;2-O
- Stork, G.; Niu, D.; Fujimoto, A.; Koft, E. R.; Balkovec, J. M.; Tata, J. R.; Dake, G. R. The First Stereoselective Total Synthesis of Quinine. J. Am. Chem. Soc. 2001, 123 (14), 3239–3242. DOI: 10.1021/ja004325r
- Mascitti, V.; Corey, E. J. Total Synthesis of (±)-Pentacycloanammoxic Acid. J. Am. Chem. Soc. 2004, 126 (48), 15664–15665. DOI: 10.1021/ja044089a